DNA Research: Publications
The Center for Polymer Studies at Boston University


Need the PDF Reader?

  1. C. K. Peng, S. Buldyrev, A. Goldberger, S. Havlin, F. Sciortino, M. Simons and H. E. Stanley, "Long-Range Correlations in Nucleotide Sequences," Nature 356, 168-171 (1992). PDF [Citations: 547]
  2. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, J. M. Hausdorff, S. Havlin, J. Mietus, C. K. Peng, F. Sciortino, and M. Simons, "Fractal Landscapes in Biological Systems: Long-Range Correlations in DNA and Interbeat Heart Intervals," in International Conference on Fractals and Disordered Systems, Hamburg, Germany, July 1992; Physica A 191, 1-12 (1992).
  3. C. K. Peng, S. Buldyrev, A. Goldberger, S. Havlin, F. Sciortino, M. Simons, and H. E. Stanley, "Fractal Landscape Analysis of DNA Walks," in International Conference on Fractals and Disordered Systems, Hamburg, Germany, July 1992; Physica A 191, 25-29 (1992).
  4. C. K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, M. Simons, and H. E. Stanley, "Finite Size Effects on Long-Range Correlations: Implications for Analyzing DNA Sequences," Phys. Rev. E 47, 3730-3733 (1993). PDF Citations: 93
  5. S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, M. Simons, and H. E. Stanley, "Generalized Levy Walk Model for DNA Nucleotide Sequences," Phys. Rev. E 47, 4514-4523 (1993). PDF [Citations: 88]
  6. S. V. Buldyrev, A. Goldberger, S. Havlin, C.-K. Peng, F. Sciortino, M. Simons and H. E. Stanley, "On Long-Range Power Law Correlations in DNA," Phys. Rev. Lett. 71, 1776 (1993). PDF
  7. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, F. Sciortino, and M. Simons, "Scaling Concepts and Complex Fluids: Long-Range Power-Law Correlations in DNA," in Complex Liquid Systems [Conf. Proceedings, 5-10 July 1992, Polistena, Italy], edited by F. Mallamace, J. de Physique IV 3, C1-C15 (1993).
  8. C. K. Peng, S. V. Buldyrev, J. M. Hausdorff, S. Havlin, J. E. Mietus, M. Simons, H. E. Stanley, and A. L. Goldberger, "Fractal Landscapes in Physiology and Medicine: Long-Range Correlations in DNA Sequences and Heart Rate Intervals," in Fractals in Biology and Medicine, G. A. Losa, T. F. Nonnenmacher and E. R. Weibel, eds. (Birkhauser Verlag, Boston, 1994), pp. 55-65.
  9. S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, and H. E. Stanley, "Fractals in Biology and Medicine: From DNA to the Heartbeat," in Fractals in Science, edited by A. Bunde and S. Havlin (Springer, Berlin, 1994), Chapter 2, pp. 48-87.
  10. C. K. Peng, S. V. Buldyrev, S. Havlin, M. Simons, H. E. Stanley and A. L. Goldberger, "Mosaic Organization of DNA Nucleotides," Phys. Rev. E 49, 1685-1689 (1994). PDF [Citations: 598]
  11. S. M. Ossadnik, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R.N. Mantegna, C.-K. Peng, M. Simons, and H. E. Stanley, "Correlation Approach to Identify Coding Regions in DNA Sequences," Biophys. J. 67, 64-70 (1994). PDF [Citations: 57]
  12. R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, M. Simons, and H. E. Stanley, "Linguistic Features of Non-coding DNA Sequences," Phys. Rev. Lett. 73, 3169-3172 (1994). PDF [Citations: 139]
  13. S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, M. E. Matsa, C.-K. Peng, M. Simons, and H. E. Stanley, "Long-Range Correlation Properties of Coding and Noncoding DNA Sequences: GenBank Analysis," Phys. Rev. E 51, 5084-5091 (1995). PDF [Citations: 202]
  14. R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, M. Simons, and H. E. Stanley, "Systematic Analysis of Coding and Noncoding DNA Sequences Using Methods of Statistical Linguistics," Phys. Rev. E 52, 2939-2950 (1995). PDF [Citations: 62]
  15. C. K. Peng, S. Havlin, H. E. Stanley, and A. L. Goldberger, "Quantification of Scaling Exponents and Crossover Phenomena in Nonstationary Heartbeat Time Series" [Proc. NATO Dynamical Disease Conference], edited by L. Glass, Chaos 5, 82-87 (1995). PDF
  16. C.-K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, M. Simons, and H. E. Stanley, "Statistical Properties of DNA Sequences," [Proc. Int'l IUPAP Conf. on Statistical Physics, Taipei], Physica A 221, 180-192 (1995). PDF
  17. S. Havlin, S. V. Buldyrev, A. L. Goldberger, R. N. Mantegna, C.-K. Peng, M. Simons, and H. E. Stanley, "Statistical Properties of DNA Sequences," in Fractal Reviews in the Natural and Applied Sciences [Proc. Marseilles Conf. on Fractals], edited by M. M. Novak (Chapman and Hall, London, 1995), pp. 1-11.
  18. S. Havlin, S. V. Buldyrev, A. L. Goldberger, R. N. Mantegna, C.-K. Peng, M. Simons, and H. E. Stanley, "Statistical and Linguistic Properties of DNA Sequences," [Proc. Fractals 95 Conf.] Fractals 3, 269-284 (1995).
  19. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, C.-K. Peng, and M. Simons, "Statistical and Linguistic Features of Noncoding DNA: A Heterogeneous `Complex System'," [Proc. Int'l Conf. on Complex Fluids], Nuovo Cimento 16D, 1339-1356 (1995).
  20. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, C.-K. Peng, M. Simons, and M. H. R. Stanley, "Long-Range Correlations and Generalized Levy Walks in DNA Sequences," in Levy Flights and Related Topics in Physics [Proc. 1994 International Conf. on Levy Flights], edited by M. F. Shlesinger, G. M. Zaslavsky, and U. Frisch (Springer, Berlin, 1995), pp. 331-347.
  21. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, C.-K. Peng, and M. Simons, "Scale Invariant Features of Coding and Noncoding DNA Sequences," in Fractal Geometry in Biological Systems: An Analytical Approach, edited by P. Iannaconne and M. K. Khokha (CRC Press, Boca Raton, 1996). pp. 15-30.
  22. H. E. Stanley, V. Afanasyev, L. A. N. Amaral, S. V. Buldyrev, A. L. Goldberger, S. Havlin, H. Leschhorn, P. Maass, R. N. Mantegna, C.-K. Peng, P. A. Prince, M. A. Salinger, M. H. R. Stanley, and G. M. Viswanathan, "Anomalous Fluctuations in the Dynamics of Complex Systems: From DNA and Physiology to Econophysics," Physica A 224, 302-321 (1996). PDF
  23. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, C.-K. Peng, and M. Simons, "Statistical and Linguistic Features of DNA Sequences," in Physics of Biomaterials: Fluctuations, Selfassembly, and Evolution [Proc. 1995 NATO-ASI, Geilo, Norway], edited by T. Riste and D. Sherrington (Kluwer, Drodrecht, 1996), pp. 219-234.
  24. S. Havlin, S. V. Buldyrev, A. L. Goldberger, P. Ch. Ivanov, C.-K. Peng, H. E. Stanley and G. M. Viswanathan, "Scaling Properties of DNA Sequences and Heartbeat Rate," in The Physics of Complex Systems [Proceedings of the International School of Physics "Enrico Fermi," Course CXXXIV], edited by F. Mallamace and H. E. Stanley (IOS Press, Amsterdam, 1997), pp. 445-472.
  25. G. M. Viswanathan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Quantification of DNA Patchiness using Correlation Measures," Biophys. J. 72, 866-875 (1997). PDF
  26. N. Dokholyan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Distribution of Base Pair Repeats in Coding and Noncoding DNA Sequences," Phys. Rev. Lett. 79, 5182-5185 (1997). PDF
  27. R. H. R. Stanley, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Clumping of Base Pairs in DNA," in The Physics of Complex Systems [Proceedings of the International School of Physics "Enrico Fermi," Course CXXXIV], edited by F. Mallamace and H. E. Stanley (IOS Press, Amsterdam, 1997), pp. 687-694.
  28. S. V. Buldyrev, N. V. Dokholyan, A. L. Goldberger, S. Havlin, C.-K. Peng, H. E. Stanley and G. M. Viswanathan "Analysis of DNA Sequences Using Methods of Statistical Physics," [Proc. Bar-Ilan Conf.] Physica A 249, 430-438 (1998). PDF
  29. G. M. Viswanathan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Long-range correlation measures for quantifying patchiness: Deviations from uniform power-law scaling in genomic DNA," Physica A 249, 581-586 (1998). PDF
  30. R. H. R. Stanley, N. V. Dokholyan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Clustering of Identical Oligonucleotides in Coding and Noncoding DNA Sequences," J. Biomol. Structure and Design 17, 79-87 (1999). PDF
  31. H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, and M. Simons, "Scaling Features of Noncoding DNA," Physica A 273, 1-18 (1999). PDF
  32. S. Havlin, S. V. Buldyrev, A. Bunde, A. L. Goldberger, P. Ch. Ivanov, C.-K. Peng, and H. E. Stanley, "Scaling in Nature: from DNA through Heartbeats to Weather," [Proc. XII Max Born Symposium, Wroclaw] Physica A 273, 46-69 (1999). PDF
  33. S. V. Buldyrev, N. V. Dokholyan, S. Havlin, H. E. Stanley, and R. H. R. Stanley, "Expansion of Tandem Repeats and Oligomer Clustering in Coding and Noncoding DNA Sequences," Physica A 273, 19-32 (1999). PDF
  34. N. Dokholyan, S. V. Buldyrev, S. Havlin, and H. E. Stanley, "Distributions of Dimeric Tandem Repeats in Non-coding and Coding DNA Sequences," J. Theor. Biol. 202, 273-282 (2000). PDF
  35. P. Bernaola-Galvan, I. Grosse, P. Carpena, J. L. Oliver, and H. E. Stanley, "Finding Borders between Coding and Noncoding DNA Regions by an Entropic Segmentation Method," Phys. Rev. Lett. 85, 1342-1345 (2000). PDF
  36. I. Grosse, H. Herzel, S. V. Buldyrev, and H. E. Stanley, "Species Independence of Mutual Information in Coding and Noncoding DNA," Phys. Rev. E 61, 5624-5629 (2000). PDF
  37. I. Grosse, S. V. Buldryev, H. E. Stanley, D. Holste, and H. Herzel, "Average Mutual Information of Coding and Noncoding DNA," in: Pacific Symposium on Biocomputing 2000, edited by R. B. Altman, A. Keith Dunker, L. Hunter, K. Lauderdale, and T. E. Klein, pp. 614-623.
  38. S. V. Buldyrev, "Power Law Correlations in DNA Sequences," Chapter 9 of Power Laws, Scale-Free Networks, and Genome Biology, edited by E. V. Koonin, Y. I. Wolf, and G. P. Karev (Springer Science+Business Media, New York, 2006). PDF
  39. B. Podobnik, J. Shao, N. V. Dokholyan, V. Zlatic, H. E. Stanley, and I. Grosse, "Similarity and Dissimilarity in Correlations of Genomic DNA," Physica A 373, 497-502 (2007). PDF
  40. J. A. L. Garcia, F. Bartumeus, D. Roche, J. Giraldo, H. E. Stanley, and E. O. Casamayor, "Ecophysiological Significance of Scale-Dependent Patterns in Prokaryotic Genomes Unveiled by a Combination of Statistic and Genometric Analyses," Genomics 91, 538-543 (2008). PDF