C. K. Peng, S. Buldyrev, A. Goldberger, S. Havlin, F. Sciortino,
M. Simons and H. E. Stanley, "Long-Range Correlations in
Nucleotide Sequences," Nature 356, 168-171 (1992). PDF[Citations: 884]
-- Accompanied by News & Views editorial (in a subsequent issue)
"Long-Range Correlations within DNA," by John Maddox, Nature 358,
103 (1992).
PDF
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, J. M. Hausdorff, S.
Havlin, J. Mietus, C. K. Peng, F. Sciortino, and M. Simons, "Fractal
Landscapes in Biological Systems: Long-Range Correlations in DNA and
Interbeat Heart Intervals," in International Conference on Fractals
and Disordered Systems, Hamburg, Germany, July 1992; Physica A
191, 1-12 (1992).
C. K. Peng, S. Buldyrev, A. Goldberger, S. Havlin, F. Sciortino, M.
Simons, and H. E. Stanley, "Fractal Landscape Analysis of DNA Walks,"
in International Conference on Fractals and Disordered Systems,
Hamburg, Germany, July 1992; Physica A 191, 25-29 (1992).
H. E. Stanley, "Fractal Landscapes in Physics and Biology"
[30th Annual Saha Memorial Lecture], Physica A 186, 1-32
(1992). PDF
C. K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin, M. Simons,
and H. E. Stanley, "Finite Size Effects on Long-Range Correlations:
Implications for Analyzing DNA Sequences," Phys. Rev. E 47,
3730-3733 (1993). PDF[Citations: 180]
S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, M. Simons,
and H. E. Stanley, "Generalized Levy Walk Model for DNA
Nucleotide Sequences," Phys. Rev. E 47, 4514-4523 (1993). PDF[Citations: 124]
S. V. Buldyrev, A. Goldberger, S. Havlin, C.-K. Peng, F. Sciortino,
M. Simons and H. E. Stanley, "On Long-Range Power Law
Correlations in DNA," Phys. Rev. Lett. 71, 1776 (1993). PDF
S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng,
H. E. Stanley, M. H. R. Stanley, and M. Simons, "Fractal
Landscapes and Molecular Evolution: Analysis of Myosin Heavy Chain
Genes," Biophys. J. 65, 2673-2679 (1993).
PDF
H. E. Stanley, S. V. Buldyrev, F. Caserta, G. Daccord,
W. Eldred, A. Goldberger, R. E. Hausman, Havlin, H. Larralde,
J. Nittmann, C. K. Peng, F. Sciortino, M. Simons, P. A. Trunfio, and
G. H. Weiss, "Fractal Landscapes in Physics & Biology," in Growth
Patterns in Physical Sciences and Biology [Proc 1991 NATO Advanced
Research Workshop, Granada, Spain, October 1991], edited by E. Louis,
L. Sander, and P. Meakin (Plenum, New York, 1993), pp. 127-136.
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
S. M. Ossadnik, C.-K. Peng, and M. Simons, "Fractal Landscapes in
Biological Systems," Fractals 1, 283-301 (1993)
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
C.-K. Peng, F. Sciortino, and M. Simons, "Scaling Concepts and Complex
Fluids: Long-Range Power-Law Correlations in DNA," in Complex Liquid
Systems [Conf. Proceedings, 5-10 July 1992, Polistena, Italy],
edited by F. Mallamace, J. de Physique IV 3, C1-C15 (1993).
C. K. Peng, S. V. Buldyrev, J. M. Hausdorff, S. Havlin,
J. E. Mietus, M. Simons, H. E. Stanley, and A. L. Goldberger, "Fractal
Landscapes in Physiology and Medicine: Long-Range Correlations in DNA
Sequences and Heart Rate Intervals," in Fractals in Biology and
Medicine, G. A. Losa, T. F. Nonnenmacher and E. R. Weibel,
eds. (Birkhauser Verlag, Boston, 1994), pp. 55-65.
H. E. Stanley, "Fractal Landscapes in Physics and Biology,"
in Thermodynamics and Statistical Physics [Proc. 4th IUPAP Modern
Physics Conf, Badajos, Spain July 1992], edited by M. G. Velarde and
F. Cuadros (World Scientific, Singapore, 1995), pp. 174-195.
S. V. Buldyrev, A. L. Goldberger, S. Havlin, C.-K. Peng, and H. E.
Stanley, "Fractals in Biology and Medicine: From DNA to the Heartbeat,"
in Fractals in Science, edited by A. Bunde and S. Havlin
(Springer, Berlin, 1994), Chapter 2, pp. 48-87.
C. K. Peng, S. V. Buldyrev, S. Havlin, M. Simons, H. E. Stanley and
A. L. Goldberger, "Mosaic Organization of DNA Nucleotides," Phys.
Rev. E 49, 1685-1689 (1994). PDF[Citations: 2,015]
S. M. Ossadnik, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
R. N. Mantegna, C.-K. Peng, M. Simons, and H. E. Stanley, "Correlation
Approach to Identify Coding Regions in DNA Sequences,"
Biophys. J. 67, 64-70 (1994). PDF[Citations: 109]
R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
C.-K. Peng, M. Simons, and H. E. Stanley, "Linguistic Features of
Non-coding DNA Sequences," Phys. Rev. Lett. 73, 3169-3172
(1994). PDF[Citations: 202]
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, Z. D. Goldberger,
S. Havlin, R. N. Mantegna, S. M. Ossadnik, C.-K. Peng, and M. Simons,
"Statistical Mechanics in Biology: How Ubiquitous are Long-Range
Correlations?" Physica A 205, 214-253 (1994).
PDF[Citations: 112]
S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N. Mantegna, M. E.
Matsa, C.-K. Peng, M. Simons, and H. E. Stanley, "Long-Range
Correlation Properties of Coding and Noncoding DNA Sequences: GenBank
Analysis," Phys. Rev. E 51, 5084-5091 (1995). PDF[Citations: 396]
R. N. Mantegna, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
C.-K. Peng, M. Simons, and H. E. Stanley, "Systematic Analysis of
Coding and Noncoding DNA Sequences Using Methods of Statistical
Linguistics," Phys. Rev. E 52, 2939-2950 (1995). PDF[Citations: 100]
C. K. Peng, S. Havlin, H. E. Stanley, and A. L. Goldberger,
"Quantification of Scaling Exponents and Crossover Phenomena in
Nonstationary Heartbeat Time Series" [Proc. NATO Dynamical Disease
Conference], edited by L. Glass, Chaos 5, 82-87
(1995). PDF
C.-K. Peng, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
R. N. Mantegna, M. Simons, and H. E. Stanley, "Statistical Properties
of DNA Sequences," [Proc. Int'l IUPAP Conf. on Statistical Physics,
Taipei], Physica A 221, 180-192 (1995). PDF
S. Havlin, S. V. Buldyrev, A. L. Goldberger, R. N. Mantegna,
C.-K. Peng, M. Simons, and H. E. Stanley, "Statistical Properties of
DNA Sequences," in Fractal Reviews in the Natural and Applied
Sciences [Proc. Marseilles Conf. on Fractals], edited by
M. M. Novak (Chapman and Hall, London, 1995), pp. 1-11.
S. Havlin, S. V. Buldyrev, A. L. Goldberger, R. N. Mantegna,
C.-K. Peng, M. Simons, and H. E. Stanley, "Statistical and Linguistic
Properties of DNA Sequences," [Proc. Fractals 95 Conf.] Fractals
3, 269-284 (1995).
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N.
Mantegna, C.-K. Peng, and M. Simons, "Statistical and Linguistic
Features of Noncoding DNA: A Heterogeneous `Complex System',"
[Proc. Int'l Conf. on Complex Fluids], Nuovo Cimento 16D,
1339-1356 (1995).
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N.
Mantegna, C.-K. Peng, M. Simons, and M. H. R. Stanley, "Long-Range
Correlations and Generalized Levy Walks in DNA Sequences," in Levy
Flights and Related Topics in Physics [Proc. 1994 International
Conf. on Levy Flights], edited by M. F. Shlesinger, G. M. Zaslavsky, and
U. Frisch (Springer, Berlin, 1995), pp. 331-347.
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N.
Mantegna, C.-K. Peng, and M. Simons, "Scale Invariant Features of Coding
and Noncoding DNA Sequences," in Fractal Geometry in Biological
Systems: An Analytical Approach, edited by P. Iannaconne and
M. K. Khokha (CRC Press, Boca Raton, 1996). pp. 15-30.
H. E. Stanley, V. Afanasyev, L. A. N. Amaral, S. V. Buldyrev,
A. L. Goldberger, S. Havlin, H. Leschhorn, P. Maass, R. N. Mantegna,
C.-K. Peng, P. A. Prince, M. A. Salinger, M. H. R. Stanley, and G. M.
Viswanathan, "Anomalous Fluctuations in the Dynamics of Complex Systems:
From DNA and Physiology to Econophysics," Physica A 224, 302-321
(1996). PDF
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin, R. N.
Mantegna, C.-K. Peng, and M. Simons, "Statistical and Linguistic
Features of DNA Sequences," in Physics of Biomaterials: Fluctuations,
Selfassembly, and Evolution [Proc. 1995 NATO-ASI, Geilo, Norway],
edited by T. Riste and D. Sherrington (Kluwer, Drodrecht, 1996),
pp. 219-234.
S. Havlin, S. V. Buldyrev, A. L. Goldberger, P. Ch. Ivanov,
C.-K. Peng, H. E. Stanley and G. M. Viswanathan, "Scaling Properties of
DNA Sequences and Heartbeat Rate," in The Physics of Complex
Systems [Proceedings of the International School of Physics "Enrico
Fermi," Course CXXXIV], edited by F. Mallamace and H. E. Stanley (IOS
Press, Amsterdam, 1997), pp. 445-472.
G. M. Viswanathan, S. V. Buldyrev, S. Havlin, and H. E. Stanley,
"Quantification of DNA Patchiness using Correlation Measures,"
Biophys. J. 72, 866-875 (1997). PDF
N. Dokholyan, S. V. Buldyrev, S. Havlin, and H. E. Stanley,
"Distribution of Base Pair Repeats in Coding and Noncoding DNA
Sequences," Phys. Rev. Lett. 79, 5182-5185 (1997). PDF
R. H. R. Stanley, S. V. Buldyrev, S. Havlin, and H. E. Stanley,
"Clumping of Base Pairs in DNA," in The Physics of Complex
Systems [Proceedings of the International School of Physics "Enrico
Fermi," Course CXXXIV], edited by F. Mallamace and H. E. Stanley (IOS
Press, Amsterdam, 1997), pp. 687-694.
S. V. Buldyrev, N. V. Dokholyan, A. L. Goldberger, S. Havlin,
C.-K. Peng, H. E. Stanley and G. M. Viswanathan "Analysis of DNA
Sequences Using Methods of Statistical Physics," [Proc. Bar-Ilan Conf.]
Physica A 249, 430-438 (1998). PDF
G. M. Viswanathan, S. V. Buldyrev, S. Havlin, and H. E. Stanley,
"Long-range correlation measures for quantifying patchiness: Deviations
from uniform power-law scaling in genomic DNA," Physica A 249,
581-586 (1998). PDF
R. H. R. Stanley, N. V. Dokholyan, S. V. Buldyrev, S. Havlin, and
H. E. Stanley, "Clustering of Identical Oligonucleotides in Coding and
Noncoding DNA Sequences," J. Biomol. Structure and Design 17,
79-87 (1999). PDF
H. E. Stanley, S. V. Buldyrev, A. L. Goldberger, S. Havlin,
C.-K. Peng, and M. Simons, "Scaling Features of Noncoding DNA," Physica
A 273, 1-18 (1999). PDF
S. Havlin, S. V. Buldyrev, A. Bunde, A. L. Goldberger,
P. Ch. Ivanov, C.-K. Peng, and H. E. Stanley, "Scaling in Nature: from
DNA through Heartbeats to Weather," [Proc. XII Max Born Symposium,
Wroclaw] Physica A 273, 46-69 (1999). PDF
S. V. Buldyrev, N. V. Dokholyan, S. Havlin, H. E. Stanley, and
R. H. R. Stanley, "Expansion of Tandem Repeats and Oligomer Clustering
in Coding and Noncoding DNA Sequences," Physica A 273, 19-32
(1999). PDF
N. Dokholyan, S. V. Buldyrev, S. Havlin, and H. E. Stanley,
"Distributions of Dimeric Tandem Repeats in Non-coding and Coding DNA
Sequences," J. Theor. Biol. 202, 273-282 (2000). PDF
P. Bernaola-Galvan, I. Grosse, P. Carpena, J. L. Oliver, and
H. E. Stanley, "Finding Borders between Coding and Noncoding DNA Regions
by an Entropic Segmentation Method," Phys. Rev. Lett. 85,
1342-1345 (2000). PDF
I. Grosse, H. Herzel, S. V. Buldyrev, and H. E. Stanley,
"Species Independence of Mutual Information in Coding and Noncoding
DNA," Phys. Rev. E 61, 5624-5629 (2000). PDF
I. Grosse, S. V. Buldryev, H. E. Stanley, D. Holste, and H. Herzel,
"Average Mutual Information of Coding and Noncoding DNA," in: Pacific
Symposium on Biocomputing 2000, edited by R. B. Altman, A. Keith Dunker,
L. Hunter, K. Lauderdale, and T. E. Klein, pp. 614-623.
S. V. Buldyrev, "Power Law Correlations in DNA Sequences," Chapter
9 of Power Laws, Scale-Free Networks, and Genome Biology, edited
by E. V. Koonin, Y. I. Wolf, and G. P. Karev (Springer Science+Business
Media, New York, 2006). PDF
B. Podobnik, J. Shao, N. V. Dokholyan, V. Zlatic, H. E. Stanley, and
I. Grosse, "Similarity and Dissimilarity in Correlations of Genomic
DNA," Physica A 373, 497-502 (2007). PDF
J. A. L. Garcia, F. Bartumeus, D. Roche,
J. Giraldo, H. E. Stanley, and E. O. Casamayor, "Ecophysiological
Significance of Scale-Dependent Patterns in Prokaryotic Genomes Unveiled
by a Combination of Statistic and Genometric Analyses,"
Genomics 91, 538-543
(2008). PDF
