Network Science |
PY 895 Course Materials |
http://polymer.bu.edu/hes/PY895Materials.html |
Photos of Class Members |
* * * * *
Class List 2016 |
Class Goals Expressed by Students in September 2015 |
* * * * *
PyMOL Download.
[The site will ask for an email. Type in: hes@bu.edu] |
* * * * *
Slides: Class Lecture #1 |
* * * * *
S. Dumais, M. J. Hawrylycz, J. Hill, B. Schölkopf, J. S. Sekhon,
and R. M. Shiffrin Drawing Causal Inference from Big Data Natl. Acad. Sciences: Arthur M. Sackler Colloquia (26-27 March 2015). E2073 in the Center for Polymer Studies Library |
S. Thurner, R. Hanel, and P. Klimek Introduction to the Theory of Complex Systems (Oxford University Press, Oxford, 2018). |
S. Wasserman and K. Faust Social Network Analysis: Method and Applications (Cambridge University Press, Cambridge, 1994). |
O. Sporns Networks of the Brain (The MIT Press, Cambridge MA, 2011). |
J. D. Noh and H. Rieger "Random Walks on Complex Networks" Phys. Rev. Lett. 92, 118701 (2004). |
K. Börner, S. Sanyal,
and A. Vispignani "Network Science" Annual Rev. Information Sci. & Tech. 41, 537-607 (2010). |
D. Brockmann and
D. Helbing "The Hidden Geometry of Complex, Network Driven Contagion Phenomena" Science 342, 1337-1342 (2013). |
V. Latora and
M. Marchiori "Is the Boston Subway a Small-World Network?" Physica A 314, 109-113 (2002). |
Y. Fujiwara, W. Souma, H. Aoyama, T. Kaizoji, and M. Aoki "Growth and Fluctuations of Personal Income" Physica A 321, 598-604 (2003). |
S. Boccaletti, G. Bianconi, R. Criado, C. I. del Genio,
J. Gómez-Gardeñes, M. Romance, I. Sendiña-Nadel, Z. Wang, and M. Zanin "The Structure and Dynamics of Multilayer Networks" Physics Reports 544, 1-122 (2014). |
S. Fortunato and D. Hric "Community Detection in Networks: A User Guide" Physics Reports 659, 1-44 (2016). |
* * * * *
[Homework for the 2016 course.] |
Homework #1 due 9 am, Friday, 30 September 2016. |
Homework #2 due 9 am, Friday, 7 October 2016. |
Homework #3 due 9 am, Friday, 14 October 2016. |
Homework #4 due 9 am, Friday, 28 October 2016. |
Homework #5 due 9 am, Friday, 18 November 2016. |
* * * * *
Paper by Yutong Duan "Degree Distribution in the Bitcoin Network." |
Paper by Jing Ma "Zipf's Law in the Dynamical Importance of Network Nodes and Links." |
Slides used in Presentation by Sakib Matin "Big Data meets Network Science." |
Slides used in Presentation by Xiangyi Meng "Quantum Percolation Theory: Wave Localization on Topological Structures." |
Slides used in Presentation by Jing Ma "Zipf's Law in the Dynamical Importance of Network Nodes and Links." |
Slides used in Presentation by Dr. Jianxi Gao Northeastern University Center for Complex Network Research "Crash Course in Handling Networks with MATLAB." |
* * * * *
Slides used in Presentation by G. A. Pantelopulos, A. Bandara, and S. Song "Probing the Chemical Similarity Network of Designed Inhibitors to the p53 binding site on MDM2." |
Slides used in Presentation by A. Becker, J. Wei, and A. Yi "GDELT Database." |
Slides used in Presentation by D. Stelter and T. Heavey "Knowledge Spaces as Networks." |
Slides used in Presentation by G. De Young and A. Kyrtsos "Node interactions in Random Networks." |
Slides used in Presentation by C. Pun and T. Chen "Limit Order Book in High Frequency Trading (HFT): A Network Approach." |
* * * * *
Pedagogical Resources: |
L. Lü, D. Chen,
X.-L. Ren, Q.-M. Zhang, Y.-C. Zhang, and T. Zhou "Vital Nodes Identification in Complex Networks" Physics Reports 650, 1-63 (2016). |
R. Durrett "Some Features of the Spread of Epidemics and Information on a Random Graph" Proc. Natl. Acad. Sci. USA 107[10], 4491-4498 (2010). |
F. Liljeros, C. R. Edling, L. A. N. Amaral, H. E. Stanley, and
Y. Åberg "The Web of Human Sexual Contacts" Nature 411, 907-908 (2001). |
M. E. J. Newman Network Data (Online resource at the University of Michigan). |
Dashun Wang, Chaoming Song, and Albert-László Barabási "Quantifying Long-Term Scientific Impact" Science 342, 127-132 (2013). |
Gregorio D'Agostino and Antonio Scala [eds] Networks of Networks: The Last Frontier of Complexity (Springer, Heidelberg, 2014). |
Hiroki Sayama Introduction to the Modeling and Analysis of Complex Systems (Open SUNY Textbooks, Geneseo NY, 2015). |
Albert-László Barabási Linked: The New Science of Networks [excerpt: pages 179-226] (Basic Books, New York, 2003). |
M. E. J. Newman Networks: An Introduction (Oxford University Press, Oxford, 2010). |