http://polymer.bu.edu/hes/PY895Materials.html

* * * * *

PyMOL Download. [The site will ask for an email. Type in: hes@bu.edu]

* * * * *

Slides: Class Lecture #1

* * * * *

Albert-László Barabási "Network Science: Luck or Reason" Nature 489, 507-508 (2012).

A.-L. Barabási Linked: How Everything Is Connected to Everything Else and What It Means for Business, Science, and Everyday Life (Perseus Publishing, Cambridge MA, 2002). E2094 in the Center for Polymer Studies Library

S. Dumais, M. J. Hawrylycz, J. Hill, B. Schölkopf, J. S. Sekhon, and R. M. Shiffrin Drawing Causal Inference from Big Data Natl. Acad. Sciences: Arthur M. Sackler Colloquia (26-27 March 2015). E2073 in the Center for Polymer Studies Library

S. Thurner, R. Hanel, and P. Klimek Introduction to the Theory of Complex Systems (Oxford University Press, Oxford, 2018).

S. Wasserman and K. Faust Social Network Analysis: Method and Applications (Cambridge University Press, Cambridge, 1994).

O. Sporns Networks of the Brain (The MIT Press, Cambridge MA, 2011).

A. Barrat, M. Barthéllemy, and A. Vespignani Dynamical Processes on Complex Networks (Cambridge University Press, Cambridge, 2008).

J. D. Noh and H. Rieger "Random Walks on Complex Networks" Phys. Rev. Lett. 92, 118701 (2004).

K. Börner, S. Sanyal, and A. Vispignani "Network Science" Annual Rev. Information Sci. & Tech. 41, 537-607 (2010).

D. Brockmann and D. Helbing "The Hidden Geometry of Complex, Network Driven Contagion Phenomena" Science 342, 1337-1342 (2013).

V. Latora and M. Marchiori "Is the Boston Subway a Small-World Network?" Physica A 314, 109-113 (2002).

Y. Fujiwara, W. Souma, H. Aoyama, T. Kaizoji, and M. Aoki "Growth and Fluctuations of Personal Income" Physica A 321, 598-604 (2003).

S. Boccaletti, G. Bianconi, R. Criado, C. I. del Genio, J. Gómez-Gardeñes, M. Romance, I. Sendiña-Nadel, Z. Wang, and M. Zanin "The Structure and Dynamics of Multilayer Networks" Physics Reports 544, 1-122 (2014).

S. Fortunato and D. Hric "Community Detection in Networks: A User Guide" Physics Reports 659, 1-44 (2016).

Albert-László Barabási Network Science Preface "Personal Introduction" 1: Introduction 2: Graph Theory 3: Random Networks 4: The Scale-Free Property 5: The Barabási-Albert Model 6: Evolving Networks 7: Degree Correlation 8: Network Robustness 9: Communities 10: Spreading Phenomena

* * * * *

[Homework for the 2016 course.]

Homework #1 due 9 am, Friday, 30 September 2016.

Homework #2 due 9 am, Friday, 7 October 2016.

Homework #3 due 9 am, Friday, 14 October 2016.

Homework #4 due 9 am, Friday, 28 October 2016.

Homework #5 due 9 am, Friday, 18 November 2016.

* * * * *

Paper by Yutong Duan "Degree Distribution in the Bitcoin Network."

Paper by Jing Ma "Zipf's Law in the Dynamical Importance of Network Nodes and Links."

Slides used in Presentation by Sakib Matin "Big Data meets Network Science."

Slides used in Presentation by Xiangyi Meng "Quantum Percolation Theory: Wave Localization on Topological Structures."

Slides used in Presentation by Jing Ma "Zipf's Law in the Dynamical Importance of Network Nodes and Links."

Slides used in Presentation by Dr. Jianxi Gao Northeastern University Center for Complex Network Research "Crash Course in Handling Networks with MATLAB."

* * * * *

Slides used in Presentation by G. A. Pantelopulos, A. Bandara, and S. Song "Probing the Chemical Similarity Network of Designed Inhibitors to the p53 binding site on MDM2."

Slides used in Presentation by A. Becker, J. Wei, and A. Yi "GDELT Database."

Slides used in Presentation by D. Stelter and T. Heavey "Knowledge Spaces as Networks."

Slides used in Presentation by G. De Young and A. Kyrtsos "Node interactions in Random Networks."

Slides used in Presentation by C. Pun and T. Chen "Limit Order Book in High Frequency Trading (HFT): A Network Approach."

* * * * *

Pedagogical Resources:

L. Lü, D. Chen, X.-L. Ren, Q.-M. Zhang, Y.-C. Zhang, and T. Zhou "Vital Nodes Identification in Complex Networks" Physics Reports 650, 1-63 (2016).

R. Durrett "Some Features of the Spread of Epidemics and Information on a Random Graph" Proc. Natl. Acad. Sci. USA 107[10], 4491-4498 (2010).

F. Liljeros, C. R. Edling, L. A. N. Amaral, H. E. Stanley, and Y. Åberg "The Web of Human Sexual Contacts" Nature 411, 907-908 (2001).

M. E. J. Newman Network Data (Online resource at the University of Michigan).

Dashun Wang, Chaoming Song, and Albert-László Barabási "Quantifying Long-Term Scientific Impact" Science 342, 127-132 (2013).

Gregorio D'Agostino and Antonio Scala [eds] Networks of Networks: The Last Frontier of Complexity (Springer, Heidelberg, 2014).

Hiroki Sayama Introduction to the Modeling and Analysis of Complex Systems (Open SUNY Textbooks, Geneseo NY, 2015).

Albert-László Barabási Linked: The New Science of Networks [excerpt: pages 179-226] (Basic Books, New York, 2003).

M. E. J. Newman Networks: An Introduction (Oxford University Press, Oxford, 2010).

 Gene Stanley's Home Page